Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide chain release factor 2 | PH7735_02109 | Q165J6 | Positive | 2277307 - 2278431 | 41517.2 |
| glutamyl-trna(gln) amidotransferase subunit a | PH7735_02110 | O28325 | Positive | 2278534 - 2279952 | 50876.7 |
| putative integral membrane protein | PH7735_02111 | Not Available | Positive | 2280010 - 2280825 | 29879.3 |
| hypothetical protein | PH7735_02112 | Not Available | Negative | 2280915 - 2281727 | 30710.9 |
| hypothetical protein | PH7735_02113 | Not Available | Positive | 2281955 - 2282323 | 13506.0 |
| acetolactate synthase small subunit | PH7735_02114 | O28555 | Negative | 2282447 - 2283010 | 20178.3 |
| acetolactate synthase isozyme 3 large subunit | PH7735_02115 | P00893 | Negative | 2283022 - 2284776 | 63679.3 |
| nitrogen regulation protein c | PH7735_02116 | Q1M7A0 | Negative | 2285266 - 2285916 | 23384.1 |
| signal transduction histidine-protein kinase/phosphatase degs | PH7735_02117 | Q1M799 | Negative | 2285913 - 2287337 | 52950.4 |
| trap transporter solute receptor, dctp family | PH7735_02118 | Not Available | Positive | 2287586 - 2288668 | 38434.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
