Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_02099 | Not Available | Positive | 2264080 - 2264301 | 8128.22 |
| succinyl-diaminopimelate desuccinylase | PH7735_02100 | Q5AKA5 | Negative | 2264356 - 2265747 | 50919.7 |
| 5-aminolevulinate synthase | PH7735_02101 | P18079 | Positive | 2265973 - 2267196 | 44428.1 |
| hypothetical protein | PH7735_02102 | Not Available | Positive | 2267309 - 2268514 | 43036.1 |
| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | PH7735_02103 | Q1GIC1 | Positive | 2268601 - 2269722 | 39822.8 |
| thiol-disulfide oxidoreductase d | PH7735_02104 | Not Available | Negative | 2269828 - 2270574 | 27263.4 |
| tpr repeat-containing protein yfgc precursor | PH7735_02105 | Not Available | Negative | 2270586 - 2271941 | 49079.3 |
| aspartate aminotransferase | PH7735_02106 | P96847 | Positive | 2271985 - 2273115 | 41182.3 |
| n-acetylmuramoyl-l-alanine amidase amic precursor | PH7735_02107 | P63884 | Positive | 2273247 - 2274494 | 45024.7 |
| penicillin-binding protein 1a | PH7735_02108 | Q1RKC5 | Positive | 2274531 - 2277170 | 97117.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
