Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_02079 | Not Available | Positive | 2248348 - 2249625 | 46728.4 |
| spermidine/putrescine transport system permease protein potb | PH7735_02080 | P0A2J8 | Positive | 2249683 - 2250531 | 31845.8 |
| inner membrane abc transporter permease protein ydcv | PH7735_02081 | Not Available | Positive | 2250535 - 2251371 | 30729.1 |
| hydantoin racemase | PH7735_02082 | Q9F466 | Positive | 2251375 - 2252013 | 21575.0 |
| triosephosphate isomerase | PH7735_02083 | Q1GIL9 | Negative | 2252107 - 2252817 | 24107.1 |
| 2-oxoglutarate-dependent ethylene/succinate-forming enzyme | PH7735_02084 | C8VK14 | Positive | 2252974 - 2253885 | 33715.7 |
| iron-sulfur cluster assembly protein | PH7735_02085 | P44672 | Negative | 2253901 - 2254299 | 14042.9 |
| fes assembly suf system protein | PH7735_02086 | P70949 | Negative | 2254342 - 2254704 | 13061.7 |
| hypothetical protein | PH7735_02087 | Not Available | Negative | 2254818 - 2255099 | 9863.45 |
| modulator of ftsh protease hflk | PH7735_02088 | P0DKS0 | Negative | 2255099 - 2255986 | 32230.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
