Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| extracytoplasmic solute receptor protein yiao | PH7735_02029 | A1WPV4 | Positive | 2199868 - 2200866 | 36049.6 |
| 2,3-diketo-l-gulonate trap transporter small permease protein yiam | PH7735_02030 | Not Available | Positive | 2200927 - 2201409 | 18080.8 |
| neu5ac permease | PH7735_02031 | Q312S1 | Positive | 2201419 - 2202702 | 44897.2 |
| (s)-mandelate dehydrogenase | PH7735_02032 | Q4ZY06 | Positive | 2202796 - 2203938 | 42243.0 |
| glycerol-3-phosphate regulon repressor | PH7735_02033 | Q51391 | Negative | 2203995 - 2204744 | 26661.1 |
| pyruvate kinase | PH7735_02034 | O05118 | Positive | 2204942 - 2206381 | 51623.2 |
| glyceraldehyde-3-phosphate dehydrogenase | PH7735_02035 | Not Available | Positive | 2206418 - 2207419 | 35527.2 |
| acyltransferase family protein | PH7735_02036 | Not Available | Positive | 2207805 - 2208881 | 40280.9 |
| hypothetical protein | PH7735_02037 | Not Available | Negative | 2209139 - 2209378 | 8365.17 |
| hypothetical protein | PH7735_02038 | Not Available | Negative | 2209445 - 2209660 | 7827.54 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
