Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-beta-hydroxybutyrate dehydrogenase | PH7735_02019 | O34782 | Positive | 2192905 - 2193693 | 27948.5 |
| lactoylglutathione lyase family protein | PH7735_02020 | Not Available | Positive | 2193722 - 2194216 | 18927.4 |
| d-3-phosphoglycerate dehydrogenase | PH7735_02021 | Q58424 | Positive | 2194209 - 2195243 | 37351.4 |
| 4-hydroxy-2-oxoglutarate aldolase | PH7735_02022 | Q46DA4 | Positive | 2195253 - 2195942 | 24948.8 |
| 2-keto-3-deoxy-galactonokinase | PH7735_02023 | P31459 | Positive | 2195923 - 2196840 | 32157.6 |
| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase | PH7735_02024 | Q92RN8 | Positive | 2196837 - 2197469 | 22241.9 |
| 2-dehydro-3-deoxy-d-gluconate 5-dehydrogenase | PH7735_02025 | Q15SS0 | Positive | 2197466 - 2198170 | 24388.2 |
| chrr cupin-like domain protein | PH7735_02026 | Not Available | Positive | 2198182 - 2198706 | 20162.1 |
| methylglyoxal synthase | PH7735_02027 | B9J6R7 | Positive | 2198684 - 2199088 | 14266.1 |
| putative hth-type transcriptional regulator ydfh | PH7735_02028 | Not Available | Negative | 2199054 - 2199743 | 25583.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
