Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polymyxin resistance protein pmri | PH7735_02009 | D4GP33 | Negative | 2182042 - 2182851 | 30022.7 |
| hypothetical protein | PH7735_02010 | Not Available | Negative | 2182839 - 2183750 | 33963.1 |
| d-allose-binding periplasmic protein precursor | PH7735_02011 | Not Available | Negative | 2183802 - 2184797 | 35187.2 |
| d-allose transport system permease protein alsc | PH7735_02012 | P36948 | Negative | 2184838 - 2185830 | 34325.8 |
| ribose import atp-binding protein rbsa | PH7735_02013 | Q2SMT0 | Negative | 2185827 - 2187401 | 56504.8 |
| putative hth-type transcriptional regulator ydfh | PH7735_02014 | P32425 | Negative | 2187567 - 2188238 | 24671.5 |
| l-arabinolactonase | PH7735_02015 | Q1JUP5 | Positive | 2188344 - 2189213 | 31521.6 |
| d-allose-binding periplasmic protein precursor | PH7735_02016 | Not Available | Positive | 2189237 - 2190271 | 36029.6 |
| galactose/methyl galactoside import atp-binding protein mgla | PH7735_02017 | Not Available | Positive | 2190360 - 2191886 | 54765.8 |
| ribose transport system permease protein rbsc | PH7735_02018 | P44736 | Positive | 2191883 - 2192902 | 35033.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
