Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_01990 | Not Available | Positive | 2162605 - 2164527 | 70788.4 |
| phosphoribosylglycinamide formyltransferase | PH7735_01991 | P08179 | Negative | 2164598 - 2165146 | 19617.8 |
| phosphoribosylformylglycinamidine cyclo-ligase | PH7735_01992 | Q1GGK7 | Negative | 2165188 - 2166234 | 35881.8 |
| Trna-met | Not Available | Not Available | Positive | 2166456 - 2166532 | Not Available |
| hypothetical protein | PH7735_01994 | Not Available | Negative | 2167070 - 2167435 | 13873.7 |
| putative integral membrane protein | PH7735_01995 | Not Available | Positive | 2168017 - 2168850 | 30755.1 |
| long-chain-fatty-acid--coa ligase | PH7735_01996 | Not Available | Negative | 2169088 - 2170728 | 60052.7 |
| putative enoyl-coa hydratase echa8 | PH7735_01997 | Not Available | Negative | 2170732 - 2171532 | 27877.8 |
| peroxiredoxin, osmc subfamily | PH7735_01998 | Not Available | Negative | 2171544 - 2171993 | 16449.2 |
| dimethylsulfonioproprionate demethylase dmda | PH7735_01999 | Not Available | Negative | 2172070 - 2173212 | 42264.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
