Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_01980 | Not Available | Positive | 2151079 - 2151516 | 15890.3 |
| hypothetical protein | PH7735_01981 | Not Available | Negative | 2151542 - 2152120 | 22024.1 |
| putative mfs-type transporter ycad | PH7735_01982 | Not Available | Negative | 2152309 - 2153580 | 45042.8 |
| putative l,d-transpeptidase ybis precursor | PH7735_01983 | Not Available | Negative | 2153716 - 2154483 | 27297.1 |
| s-adenosylmethionine:trna ribosyltransferase-isomerase | PH7735_01984 | Q5LRA3 | Negative | 2154657 - 2155706 | 38158.3 |
| putative protein involved in outer membrane biogenesis | PH7735_01985 | Not Available | Negative | 2155716 - 2159033 | 118888.0 |
| putative peroxiredoxin bcp | PH7735_01986 | Q83CY8 | Positive | 2159181 - 2159642 | 16904.2 |
| hypothetical protein | PH7735_01987 | P43935 | Positive | 2159639 - 2160475 | 31353.4 |
| murein hydrolase activator nlpd precursor | PH7735_01988 | P0AFT0 | Positive | 2160630 - 2161943 | 48713.3 |
| putative acyltransferase | PH7735_01989 | Not Available | Positive | 2161933 - 2162442 | 17453.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
