Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosomal silencing factor rsfs | PH7735_00159 | Q5NLX3 | Positive | 179886 - 180269 | 13768.4 |
| ribosomal rna large subunit methyltransferase h | PH7735_00160 | Q1GDM9 | Positive | 180302 - 180778 | 16903.6 |
| hypothetical protein | PH7735_00161 | Not Available | Negative | 180791 - 181501 | 25983.0 |
| v8-like glu-specific endopeptidase | PH7735_00162 | Not Available | Positive | 181628 - 182398 | 27653.3 |
| v8-like glu-specific endopeptidase | PH7735_00163 | Not Available | Positive | 182395 - 183219 | 29627.1 |
| 16 kda heat shock protein a | PH7735_00164 | A7FPA8 | Positive | 183366 - 183839 | 17503.8 |
| magnesium chelatase subunit d | PH7735_00165 | P76481 | Negative | 183947 - 185887 | 69639.1 |
| sigma-w factor | PH7735_00166 | Not Available | Negative | 185884 - 186426 | 20478.9 |
| ectoine utilization protein eute | PH7735_00167 | E1V7W0 | Negative | 186472 - 187479 | 36043.0 |
| nitric oxide dioxygenase | PH7735_00168 | Not Available | Positive | 187599 - 188039 | 16717.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
