Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_01970 | Not Available | Positive | 2139609 - 2140028 | 15758.2 |
| putative peroxiredoxins | PH7735_01971 | Not Available | Negative | 2140072 - 2140518 | 16004.5 |
| carboxylate-amine ligase ybdk | PH7735_01972 | A8LME6 | Positive | 2140690 - 2141823 | 42558.5 |
| putative enoyl-coa hydratase echa8 | PH7735_01973 | Q9LKJ1 | Positive | 2142145 - 2143185 | 37303.2 |
| 3-hydroxyisobutyrate dehydrogenase | PH7735_01974 | P63936 | Positive | 2143189 - 2144061 | 29553.3 |
| mmge/prpd family protein | PH7735_01975 | Not Available | Positive | 2144212 - 2145567 | 48171.0 |
| excinuclease abc subunit a | PH7735_01976 | Q89L46 | Negative | 2145579 - 2148437 | 105683.0 |
| molybdopterin biosynthesis protein moeb | PH7735_01977 | Not Available | Positive | 2148592 - 2148951 | 12910.5 |
| hypothetical protein | PH7735_01978 | Not Available | Negative | 2148958 - 2149518 | 21506.9 |
| dihydrolipoyl dehydrogenase | PH7735_01979 | P50970 | Negative | 2149536 - 2150930 | 49394.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
