Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_01960 | Not Available | Negative | 2129388 - 2130125 | 26994.3 |
| transketolase 1 | PH7735_01961 | D5AV94 | Positive | 2130395 - 2132413 | 72863.9 |
| hypothetical protein | PH7735_01962 | Not Available | Positive | 2132480 - 2133025 | 20346.5 |
| hypothetical protein | PH7735_01963 | Not Available | Negative | 2133069 - 2133872 | 29671.4 |
| inner membrane protein yedi | PH7735_01964 | P46125 | Negative | 2133972 - 2134949 | 34549.7 |
| phosphopantetheine adenylyltransferase | PH7735_01965 | Q5LRC9 | Negative | 2135089 - 2135580 | 18044.0 |
| inosine 5'-monophosphate dehydrogenase | PH7735_01966 | Q9LEV3 | Negative | 2135916 - 2136350 | 15420.8 |
| hth-type transcriptional regulator gltr | PH7735_01967 | Not Available | Negative | 2136410 - 2137306 | 33050.9 |
| methylmalonate-semialdehyde dehydrogenase | PH7735_01968 | Q9I702 | Positive | 2137410 - 2138909 | 53964.3 |
| hypothetical protein | PH7735_01969 | Not Available | Positive | 2138987 - 2139403 | 15317.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
