Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-malate degradation protein r | PH7735_01950 | Q8X4M5 | Positive | 2120214 - 2121119 | 33982.9 |
| putative mscs family protein yfkc | PH7735_01951 | Q8R6L9 | Positive | 2121446 - 2123728 | 82454.8 |
| outer membrane protein assembly complex, yaet protein | PH7735_01952 | Not Available | Positive | 2123814 - 2124926 | 39343.4 |
| phosphoribosylformylglycinamidine synthase 2 | PH7735_01953 | Q1GHL5 | Positive | 2125009 - 2127168 | 76551.6 |
| putative transcriptional regulator, bola superfamily | PH7735_01954 | Not Available | Positive | 2127399 - 2127626 | 8114.69 |
| hypothetical protein | PH7735_01955 | Not Available | Positive | 2127626 - 2127859 | 8560.49 |
| monothiol glutaredoxin | PH7735_01956 | P73056 | Positive | 2127856 - 2128218 | 13242.6 |
| hypothetical protein | PH7735_01957 | Not Available | Positive | 2128225 - 2128665 | 16122.5 |
| lysozyme inhibitor | PH7735_01958 | Not Available | Negative | 2128662 - 2129000 | 11782.2 |
| cell division protein zapa | PH7735_01959 | Not Available | Negative | 2129000 - 2129395 | 14187.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
