Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1,2-epoxyphenylacetyl-coa isomerase | PH7735_01940 | P24162 | Negative | 2108580 - 2109356 | 27448.8 |
| cytochrome c-type biogenesis protein ccmh precursor | PH7735_01941 | Q00501 | Negative | 2109433 - 2109885 | 16605.2 |
| cytochrome c-type biogenesis protein ccmf | PH7735_01942 | Q00500 | Negative | 2109882 - 2111855 | 71448.1 |
| hypothetical protein | PH7735_01943 | Not Available | Negative | 2111933 - 2112454 | 19590.7 |
| putative peptidoglycan domain protein | PH7735_01944 | Not Available | Negative | 2112445 - 2113053 | 22519.7 |
| heme chaperone ccme | PH7735_01945 | Q5LS91 | Negative | 2113205 - 2113648 | 15979.1 |
| n-acetyl-gamma-glutamyl-phosphate reductase | PH7735_01946 | Q5LS92 | Negative | 2113657 - 2114685 | 37053.6 |
| glutamate racemase | PH7735_01947 | A8LMF7 | Negative | 2114789 - 2115601 | 29207.9 |
| 2-acyl-glycerophospho-ethanolamine acyltransferase | PH7735_01948 | Not Available | Negative | 2115621 - 2116502 | 32447.3 |
| indolepyruvate ferredoxin oxidoreductase | PH7735_01949 | Not Available | Negative | 2116621 - 2120040 | 124475.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
