Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| anthranilate phosphoribosyltransferase | PH7735_01930 | Q5LRH8 | Positive | 2097462 - 2098484 | 35202.0 |
| uracil-dna glycosylase | PH7735_01931 | Q1GHJ4 | Positive | 2098509 - 2099153 | 23847.4 |
| indole-3-glycerol phosphate synthase | PH7735_01932 | Q9ZFA7 | Positive | 2099150 - 2099965 | 29476.2 |
| molybdenum cofactor biosynthesis protein c | PH7735_01933 | A8LMJ8 | Positive | 2099965 - 2100441 | 16587.2 |
| molybdopterin molybdenumtransferase | PH7735_01934 | P12281 | Positive | 2100438 - 2101613 | 40910.3 |
| lexa repressor | PH7735_01935 | Q5LRH4 | Positive | 2101736 - 2102449 | 25770.1 |
| comec family competence protein | PH7735_01936 | P39695 | Negative | 2102446 - 2104467 | 71129.8 |
| glutamate--trna ligase | PH7735_01937 | Q5LRH2 | Positive | 2104547 - 2105971 | 52318.0 |
| citrate synthase | PH7735_01938 | O33915 | Positive | 2106045 - 2107340 | 48330.6 |
| hemolysin, chromosomal | PH7735_01939 | Not Available | Positive | 2107548 - 2108483 | 32275.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
