Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cold shock protein cspv | PH7735_01920 | Not Available | Negative | 2087546 - 2088100 | 20172.2 |
| pyridoxine/pyridoxamine 5'-phosphate oxidase | PH7735_01921 | Q5LRI7 | Negative | 2088189 - 2088794 | 22593.5 |
| enoyl-[acyl-carrier-protein] reductase | PH7735_01922 | Not Available | Positive | 2088888 - 2089706 | 29351.3 |
| xanthine phosphoribosyltransferase | PH7735_01923 | Q28PG8 | Positive | 2089707 - 2090225 | 19255.8 |
| aspartate aminotransferase | PH7735_01924 | E9L7A5 | Positive | 2090358 - 2091536 | 42888.3 |
| hypothetical protein | PH7735_01925 | Not Available | Negative | 2091375 - 2091743 | 12966.5 |
| peptidyl-prolyl cis-trans isomerase d | PH7735_01926 | Not Available | Positive | 2091744 - 2093588 | 66855.5 |
| anthranilate synthase component 1 | PH7735_01927 | P95646 | Positive | 2093625 - 2095136 | 54803.1 |
| divergent polysaccharide deacetylase | PH7735_01928 | Not Available | Negative | 2095221 - 2096684 | 49913.1 |
| para-aminobenzoate synthase glutamine amidotransferase component ii | PH7735_01929 | P26922 | Positive | 2096871 - 2097458 | 21242.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
