Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hnh endonuclease | PH7735_01900 | Not Available | Negative | 2066810 - 2067394 | 22417.8 |
| hypothetical protein | PH7735_01901 | Not Available | Negative | 2067661 - 2069298 | 58062.1 |
| carboxylesterase 2 | PH7735_01902 | Q4I8Q4 | Negative | 2069433 - 2070101 | 23718.3 |
| dna-3-methyladenine glycosylase 2 | PH7735_01903 | Not Available | Negative | 2070098 - 2070727 | 23326.2 |
| mfs transporter, aromatic acid:h+ symporter (aahs) family | PH7735_01904 | A6X7E7 | Positive | 2070952 - 2072160 | 41866.0 |
| squalene synthase hpnd | PH7735_01905 | Not Available | Negative | 2072190 - 2072960 | 28224.6 |
| putative magnesium chelatase accessory protein | PH7735_01906 | Not Available | Negative | 2072950 - 2073933 | 35189.1 |
| 2-isopropylmalate synthase | PH7735_01907 | O66682 | Negative | 2073945 - 2075576 | 59236.0 |
| cysteine--trna ligase | PH7735_01908 | Q1GHI0 | Negative | 2075576 - 2076991 | 52281.2 |
| hypothetical protein | PH7735_01909 | Not Available | Positive | 2077216 - 2077563 | 12394.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
