Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_01890 | Not Available | Negative | 2058940 - 2059677 | 27668.9 |
| Trna-leu | Not Available | Not Available | Positive | 2059868 - 2059953 | Not Available |
| neu5ac permease | PH7735_01892 | Not Available | Negative | 2060126 - 2061478 | 47543.0 |
| trap-type c4-dicarboxylate transport system, small permease component | PH7735_01893 | Not Available | Negative | 2061475 - 2062059 | 20968.0 |
| snare associated golgi protein | PH7735_01894 | P44832 | Positive | 2062093 - 2062827 | 27035.6 |
| disulfide bond formation protein b | PH7735_01895 | Not Available | Positive | 2062824 - 2063300 | 17582.5 |
| regulatory protein asnc | PH7735_01896 | Not Available | Negative | 2063328 - 2063753 | 15512.8 |
| arginase | PH7735_01897 | P0A2Y1 | Positive | 2063872 - 2064795 | 32879.0 |
| hypothetical protein | PH7735_01898 | Not Available | Positive | 2064795 - 2065724 | 34420.1 |
| ornithine cyclodeaminase | PH7735_01899 | Q8FVE4 | Positive | 2065724 - 2066767 | 37955.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
