Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sodium, potassium, lithium and rubidium/h(+) antiporter | PH7735_01880 | G3XD29 | Positive | 2045929 - 2047203 | 44868.2 |
| trans-2,3-dihydro-3-hydroxyanthranilate isomerase | PH7735_01881 | Q98KN6 | Positive | 2047203 - 2048045 | 29608.1 |
| atp-dependent rna helicase rhle | PH7735_01882 | P25888 | Negative | 2048070 - 2049404 | 47437.6 |
| ferric uptake regulation protein | PH7735_01883 | O07315 | Positive | 2049745 - 2050155 | 15437.3 |
| hypothetical protein | PH7735_01884 | Not Available | Negative | 2050174 - 2051313 | 40500.4 |
| aminomethyltransferase | PH7735_01885 | Not Available | Negative | 2051404 - 2053827 | 89720.7 |
| hypothetical protein | PH7735_01886 | Not Available | Negative | 2053970 - 2054926 | 35120.6 |
| hypothetical protein | PH7735_01887 | Q87HV6 | Negative | 2055075 - 2055647 | 21185.4 |
| aminomethyltransferase | PH7735_01888 | Q63342 | Positive | 2055814 - 2058231 | 88598.5 |
| purine catabolism protein pucb | PH7735_01889 | Not Available | Positive | 2058321 - 2058923 | 21317.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
