Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| heme no binding protein | PH7735_00149 | Not Available | Negative | 167981 - 168523 | 20141.7 |
| na/pi-cotransporter ii-related protein | PH7735_00150 | P54463 | Positive | 168958 - 170562 | 57395.9 |
| 3-isopropylmalate dehydrogenase | PH7735_00151 | Q5LWZ5 | Negative | 170598 - 171704 | 39474.1 |
| hth-type transcriptional activator cmpr | PH7735_00152 | A0A0H2ZDG9 | Negative | 171762 - 172655 | 33093.8 |
| rmld substrate binding domain protein | PH7735_00153 | Not Available | Positive | 172752 - 173657 | 32979.3 |
| 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) | PH7735_00154 | Not Available | Negative | 173624 - 174526 | 32759.8 |
| hypothetical protein | PH7735_00155 | Not Available | Negative | 174631 - 175464 | 30711.1 |
| 3-isopropylmalate dehydratase small subunit | PH7735_00156 | Q5LX07 | Negative | 175819 - 176424 | 22509.9 |
| 3-isopropylmalate dehydratase large subunit | PH7735_00157 | Q5LX06 | Negative | 176445 - 177851 | 50503.2 |
| putative mscs family protein.1 precursor | PH7735_00158 | Q57362 | Positive | 178246 - 179661 | 52383.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
