Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_01870 | Not Available | Negative | 2036252 - 2036656 | 14800.0 |
| agmatinase | PH7735_01871 | Q7P0S6 | Negative | 2036840 - 2037805 | 34636.9 |
| putative hydrolase yxep | PH7735_01872 | Not Available | Negative | 2037951 - 2039111 | 41385.5 |
| nucleoside triphosphate pyrophosphohydrolase | PH7735_01873 | P0AEY4 | Positive | 2039176 - 2040003 | 30857.4 |
| iron uptake protein a1 precursor | PH7735_01874 | P72827 | Positive | 2040085 - 2041098 | 36945.6 |
| pyrimidine-specific ribonucleoside hydrolase riha | PH7735_01875 | Q9P6J4 | Positive | 2041326 - 2042267 | 33723.6 |
| putative acetyltransferase | PH7735_01876 | Not Available | Positive | 2042264 - 2042713 | 16332.9 |
| hypothetical protein | PH7735_01877 | Q1GI57 | Positive | 2042723 - 2044129 | 51551.3 |
| putative inner membrane transporter yije | PH7735_01878 | Not Available | Negative | 2044165 - 2045040 | 31496.6 |
| endonuclease/exonuclease/phosphatase family protein | PH7735_01879 | Not Available | Positive | 2045169 - 2045864 | 25377.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
