Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipopolysaccharide abc transporter permease lptf | PH7735_01860 | Not Available | Positive | 2025721 - 2026842 | 41400.8 |
| lipopolysaccharide export system permease protein lptg | PH7735_01861 | Not Available | Positive | 2026839 - 2027936 | 40278.1 |
| organic solvent tolerance protein | PH7735_01862 | Not Available | Positive | 2027933 - 2030116 | 81561.7 |
| peptidyl-prolyl cis-trans isomerase sura | PH7735_01863 | Not Available | Positive | 2030124 - 2031353 | 45078.8 |
| 4-hydroxythreonine-4-phosphate dehydrogenase | PH7735_01864 | Q1GI38 | Positive | 2031355 - 2032338 | 34660.0 |
| ribosomal rna small subunit methyltransferase a | PH7735_01865 | Q1GI39 | Positive | 2032351 - 2033193 | 30512.3 |
| hypothetical protein | PH7735_01866 | Not Available | Negative | 2033236 - 2033838 | 22638.9 |
| release factor glutamine methyltransferase | PH7735_01867 | Q3J2B7 | Negative | 2034055 - 2034888 | 30200.3 |
| peptide chain release factor 1 | PH7735_01868 | Q5LQM7 | Negative | 2034885 - 2035880 | 36926.6 |
| hypothetical protein | PH7735_01869 | Not Available | Positive | 2035949 - 2036329 | 13459.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
