Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-3-o-acylglucosamine n-acyltransferase | PH7735_01840 | Q5LS40 | Negative | 2003571 - 2004662 | 37247.6 |
| murein l,d-transpeptidase | PH7735_01841 | P22525 | Negative | 2004688 - 2006301 | 60319.2 |
| peptidase m15 | PH7735_01842 | Not Available | Positive | 2006619 - 2007188 | 20707.8 |
| thiosulfate reductase cytochrome b subunit | PH7735_01843 | Not Available | Negative | 2007327 - 2007986 | 25197.2 |
| cytochrome c nitrate reductase, small subunit | PH7735_01844 | Not Available | Negative | 2007979 - 2009592 | 58759.3 |
| 3-chloro-4-hydroxyphenylacetate reductive dehalogenase precursor | PH7735_01845 | P81594 | Positive | 2009785 - 2012982 | 117975.0 |
| osmolarity sensor protein envz | PH7735_01846 | P0AEJ4 | Negative | 2013033 - 2014346 | 48598.4 |
| hydroxyacylglutathione hydrolase | PH7735_01847 | Not Available | Positive | 2014386 - 2015300 | 32227.0 |
| Trna-asn | Not Available | Not Available | Positive | 2015380 - 2015454 | Not Available |
| cdp-diacylglycerol-serine o-phosphatidyltransferase | PH7735_01849 | Q9ZBM2 | Negative | 2015720 - 2016466 | 26657.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
