Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-acetyltransferase | PH7735_01820 | P40882 | Negative | 1984407 - 1984928 | 17967.8 |
| guanylate kinase | PH7735_01821 | Q5LS25 | Negative | 1984928 - 1985578 | 24740.2 |
| hypothetical protein | PH7735_01822 | P44726 | Negative | 1985582 - 1986472 | 32267.7 |
| pas domain protein | PH7735_01823 | Not Available | Positive | 1986647 - 1987267 | 22486.2 |
| phospho-2-dehydro-3-deoxyheptonate aldolase | PH7735_01824 | A0A067XGX8 | Negative | 1987328 - 1988695 | 49672.9 |
| carnitine catabolism transcriptional activator | PH7735_01825 | Not Available | Positive | 1988966 - 1989970 | 37810.4 |
| hypothetical protein | PH7735_01826 | Not Available | Negative | 1990068 - 1990505 | 16940.5 |
| soluble aldose sugar dehydrogenase ylii precursor | PH7735_01827 | P75804 | Negative | 1990563 - 1991663 | 40263.2 |
| leucine-specific-binding protein precursor | PH7735_01828 | Not Available | Positive | 1991832 - 1993016 | 38885.1 |
| lipopolysaccharide export system atp-binding protein lptb | PH7735_01829 | Q58663 | Positive | 1993116 - 1993898 | 28460.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
