Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fatty acyl-coa reductase | PH7735_01770 | Q8NBN7 | Negative | 1934563 - 1935348 | 27382.7 |
| alkanal monooxygenase alpha chain | PH7735_01771 | Not Available | Negative | 1935359 - 1936327 | 35024.6 |
| d-malate degradation protein r | PH7735_01772 | P76250 | Positive | 1936479 - 1937387 | 32767.3 |
| carbohydrate-selective porin | PH7735_01773 | Not Available | Negative | 1937451 - 1938650 | 42881.7 |
| calcineurin-like phosphoesterase superfamily domain protein | PH7735_01774 | Not Available | Negative | 1938664 - 1939659 | 36893.6 |
| imidazolonepropionase | PH7735_01775 | Not Available | Negative | 1939731 - 1941161 | 51754.1 |
| transcriptional activator nphr | PH7735_01776 | Not Available | Positive | 1941353 - 1942342 | 35948.3 |
| zinc transport protein zntb | PH7735_01777 | Q6D5P8 | Positive | 1942506 - 1943477 | 35362.7 |
| deoxyribodipyrimidine photo-lyase-related protein | PH7735_01778 | Not Available | Positive | 1943708 - 1945246 | 59179.6 |
| dna polymerase i, thermostable | PH7735_01779 | P19821 | Negative | 1945722 - 1947260 | 59050.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
