Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5,10-methylenetetrahydrofolate reductase | PH7735_01760 | G2IQS8 | Negative | 1922811 - 1923734 | 33471.2 |
| hypothetical protein | PH7735_01761 | Not Available | Negative | 1923761 - 1924057 | 10888.9 |
| guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase | PH7735_01762 | C6DHF6 | Positive | 1924282 - 1925394 | 40849.5 |
| ribosomal rna large subunit methyltransferase e | PH7735_01763 | Q5LSB0 | Positive | 1925476 - 1926192 | 26178.6 |
| putative membrane protein | PH7735_01764 | Not Available | Positive | 1926446 - 1928131 | 61983.9 |
| putative periplasmic serine endoprotease degp-like precursor | PH7735_01765 | B1J4D7 | Positive | 1928263 - 1929693 | 49111.8 |
| transcriptional regulatory protein cusr | PH7735_01766 | P0AD00 | Positive | 1929868 - 1930551 | 25515.8 |
| sensor kinase cuss | PH7735_01767 | Q9HZ47 | Positive | 1930557 - 1931912 | 49072.0 |
| adenylate cyclase 1 | PH7735_01768 | Not Available | Negative | 1931935 - 1933230 | 47173.7 |
| zinc-type alcohol dehydrogenase-like protein | PH7735_01769 | K4BW79 | Negative | 1933338 - 1934324 | 34026.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
