Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| liv-i protein h | PH7735_01750 | Not Available | Negative | 1908655 - 1909551 | 31257.4 |
| urea abc transporter, urea binding protein | PH7735_01751 | Not Available | Negative | 1909707 - 1911032 | 46452.9 |
| leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor | PH7735_01752 | Not Available | Negative | 1911301 - 1912545 | 45599.6 |
| nitrogen assimilation regulatory protein | PH7735_01753 | Q06065 | Negative | 1912542 - 1913879 | 49342.8 |
| sporulation kinase e | PH7735_01754 | P39764 | Negative | 1913876 - 1915612 | 63774.2 |
| virulence-regulating protein virs | PH7735_01755 | P9WMJ2 | Positive | 1916129 - 1917139 | 37770.4 |
| yihy family inner membrane protein | PH7735_01756 | Not Available | Positive | 1917575 - 1918465 | 32579.2 |
| major cardiolipin synthase clsa | PH7735_01757 | B7V5T6 | Negative | 1918457 - 1919869 | 52493.8 |
| long-chain-fatty-acid--coa ligase | PH7735_01758 | A9VM74 | Positive | 1920045 - 1921634 | 59016.5 |
| 5-methyltetrahydrofolate:corrinoid/iron-sulfur protein co-methyltransferase | PH7735_01759 | P0DX08 | Negative | 1921714 - 1922796 | 38563.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
