Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cyclolysin | PH7735_01740 | Not Available | Positive | 1874436 - 1899095 | 819281.0 |
| copper/silver efflux system membrane fusion protein cusb | PH7735_01741 | Not Available | Negative | 1899154 - 1899948 | 28681.9 |
| sapc | PH7735_01742 | Not Available | Positive | 1900129 - 1900899 | 28884.2 |
| neu5ac permease | PH7735_01743 | Not Available | Negative | 1901000 - 1902829 | 63821.1 |
| trap transporter solute receptor, taxi family | PH7735_01744 | P0A3T3 | Negative | 1902863 - 1903822 | 33673.0 |
| putative cyclase | PH7735_01745 | Not Available | Negative | 1904027 - 1904971 | 33651.5 |
| 1,3-propanediol dehydrogenase | PH7735_01746 | A4IP64 | Negative | 1905051 - 1906223 | 40485.5 |
| liv-i protein f | PH7735_01747 | P0A192 | Negative | 1906226 - 1906885 | 24082.4 |
| lipopolysaccharide export system atp-binding protein lptb | PH7735_01748 | O28881 | Negative | 1906879 - 1907676 | 29334.4 |
| leucine/isoleucine/valine transporter permease subunit | PH7735_01749 | Not Available | Negative | 1907678 - 1908658 | 35168.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
