Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cyclopropane-fatty-acyl-phospholipid synthase | PH7735_01730 | O53732 | Positive | 1860979 - 1862187 | 46462.7 |
| hypothetical protein | PH7735_01731 | Not Available | Positive | 1862187 - 1862627 | 15662.5 |
| adp-ribose pyrophosphatase | PH7735_01732 | P83843 | Positive | 1862632 - 1863756 | 41600.9 |
| cysteine synthase | PH7735_01733 | Q7RYW6 | Positive | 1863813 - 1864841 | 35743.9 |
| potassium efflux system kefa precursor | PH7735_01734 | Not Available | Positive | 1864849 - 1867269 | 88429.1 |
| alanine--trna ligase | PH7735_01735 | Q8TPA0 | Positive | 1867266 - 1867985 | 25945.1 |
| Trna-ser | Not Available | Not Available | Positive | 1868078 - 1868167 | Not Available |
| putative efflux pump membrane fusion protein | PH7735_01737 | Not Available | Positive | 1868497 - 1870416 | 69691.7 |
| zn-dependent proteases | PH7735_01738 | Not Available | Positive | 1870417 - 1872570 | 78506.9 |
| preprotein translocase subunit seca | PH7735_01739 | Q3AQA7 | Positive | 1872578 - 1874284 | 62369.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
