Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonuclease d | PH7735_01710 | Q28RA7 | Positive | 1845975 - 1847135 | 43169.9 |
| hypothetical protein | PH7735_01711 | Not Available | Negative | 1847155 - 1847649 | 17736.4 |
| cysteine desulfuration protein sufe | PH7735_01712 | Q52742 | Positive | 1847776 - 1848189 | 15298.3 |
| hypothetical protein | PH7735_01713 | Not Available | Negative | 1848218 - 1848445 | 8420.09 |
| hypothetical protein | PH7735_01714 | Not Available | Negative | 1848442 - 1848621 | 6821.87 |
| fumarate hydratase class ii | PH7735_01715 | Q92PB6 | Negative | 1848621 - 1850015 | 49479.3 |
| stringent starvation protein b | PH7735_01716 | Not Available | Negative | 1850133 - 1850606 | 18254.0 |
| putative chromate transport protein | PH7735_01717 | P14285 | Negative | 1850690 - 1851937 | 44066.1 |
| putative ester cyclase | PH7735_01718 | Not Available | Negative | 1852004 - 1852429 | 15947.0 |
| Tmrna,resume consensus sequence (at 196): tacaattgcaaatgacaa | Not Available | Not Available | Positive | 1852502 - 1852836 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
