Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| septum formation initiator | PH7735_01700 | Not Available | Negative | 1837763 - 1838065 | 11408.6 |
| putative acyl-coa dehydrogenase aidb | PH7735_01701 | P33224 | Positive | 1838238 - 1839854 | 58735.0 |
| hypothetical protein | PH7735_01702 | Not Available | Negative | 1839908 - 1840081 | 6589.78 |
| hypothetical protein | PH7735_01703 | Not Available | Negative | 1840078 - 1840329 | 9520.74 |
| morphology and auto-aggregation control protein | PH7735_01704 | Not Available | Positive | 1840461 - 1841399 | 34292.6 |
| fructose-bisphosphate aldolase class 1 | PH7735_01705 | Q8RGH3 | Negative | 1841396 - 1842289 | 31715.9 |
| phosphoglycerate kinase | PH7735_01706 | Q5LR94 | Negative | 1842432 - 1843622 | 41321.7 |
| peptidyl-prolyl cis-trans isomerase a precursor | PH7735_01707 | Q8YHB5 | Positive | 1843750 - 1844262 | 18412.7 |
| peptidyl-prolyl cis-trans isomerase cyp18 | PH7735_01708 | Not Available | Positive | 1844255 - 1844803 | 19459.2 |
| hypothetical protein | PH7735_01709 | Not Available | Positive | 1844897 - 1845868 | 36210.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
