Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trigger factor | PH7735_01659 | Q5LR43 | Positive | 1803374 - 1804708 | 49285.9 |
| aquaporin z 2 | PH7735_01660 | Q2YR68 | Positive | 1804991 - 1805680 | 23211.6 |
| hypothetical protein | PH7735_01661 | Not Available | Positive | 1805814 - 1806233 | 15726.6 |
| transglycosylase slt domain protein | PH7735_01662 | Not Available | Negative | 1806234 - 1806725 | 18309.9 |
| inner membrane protein yiav precursor | PH7735_01663 | Q8FAX1 | Negative | 1806832 - 1808067 | 45537.6 |
| hypothetical protein | PH7735_01664 | Not Available | Negative | 1808071 - 1808478 | 14794.2 |
| 50s ribosomal protein l9 | PH7735_01665 | Q5LR48 | Negative | 1808631 - 1809242 | 21636.2 |
| hypothetical protein | PH7735_01666 | A8LQQ6 | Negative | 1809255 - 1809482 | 8664.8 |
| 30s ribosomal protein s6 | PH7735_01667 | A8LQQ5 | Negative | 1809511 - 1809864 | 13605.1 |
| hypothetical protein | PH7735_01668 | Not Available | Positive | 1810152 - 1810646 | 18092.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
