Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_01629 | Not Available | Negative | 1779170 - 1779790 | 22022.4 |
| isocitrate dehydrogenase | PH7735_01630 | P50215 | Negative | 1779902 - 1781116 | 45460.4 |
| glycerophosphoryl diester phosphodiesterase | PH7735_01631 | O07592 | Positive | 1781279 - 1783114 | 67192.1 |
| hypothetical protein | PH7735_01632 | Not Available | Positive | 1783101 - 1783646 | 19890.6 |
| 5'-nucleotidase | PH7735_01633 | Not Available | Negative | 1783650 - 1784801 | 42411.0 |
| hypothetical protein | PH7735_01634 | Not Available | Negative | 1784798 - 1785031 | 8594.21 |
| exosortase a system-associated hydrolase 1 | PH7735_01635 | Q9ZD73 | Negative | 1785035 - 1785691 | 24293.8 |
| hth-type transcriptional regulator iscr | PH7735_01636 | B6EGX4 | Positive | 1785853 - 1786314 | 16194.5 |
| cysteine desulfurase | PH7735_01637 | Q01179 | Positive | 1786406 - 1787452 | 36172.9 |
| fes cluster assembly protein sufb | PH7735_01638 | Q55790 | Positive | 1787472 - 1788995 | 56794.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
