Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| secreted effector protein pipb2 | PH7735_01599 | Not Available | Positive | 1743422 - 1743763 | 12472.6 |
| patatin-like phospholipase | PH7735_01600 | Not Available | Positive | 1743756 - 1744793 | 37261.6 |
| hypothetical protein | PH7735_01601 | Not Available | Negative | 1744797 - 1745480 | 25227.9 |
| pseudouridine-5'-phosphate glycosidase | PH7735_01602 | Q28PY7 | Negative | 1745557 - 1746471 | 31382.8 |
| pseudouridine kinase | PH7735_01603 | Not Available | Negative | 1746468 - 1747361 | 30924.9 |
| thiamine-phosphate pyrophosphorylase | PH7735_01604 | Not Available | Negative | 1747414 - 1748031 | 22272.4 |
| hypothetical protein | PH7735_01605 | Not Available | Negative | 1748089 - 1748418 | 11763.3 |
| putative trna/rrna methyltransferase | PH7735_01606 | Not Available | Positive | 1748556 - 1749305 | 27746.4 |
| heme a synthase | PH7735_01607 | Q1GGZ8 | Positive | 1749387 - 1750538 | 42628.5 |
| thermostable carboxypeptidase 1 | PH7735_01608 | Q5SLM3 | Positive | 1750542 - 1752017 | 54022.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
