Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| c4-dicarboxylate transport sensor protein dctb | PH7735_01589 | Not Available | Positive | 1728026 - 1729792 | 64547.3 |
| c4-dicarboxylate transport transcriptional regulatory protein dctd | PH7735_01590 | P13632 | Positive | 1729799 - 1731133 | 49004.3 |
| na+/panthothenate symporter | PH7735_01591 | Not Available | Negative | 1731222 - 1732607 | 48904.1 |
| ribonuclease e | PH7735_01592 | P44443 | Positive | 1733315 - 1736545 | 117173.0 |
| sulfurtransferase tusa | PH7735_01593 | D3RPC0 | Negative | 1736715 - 1736939 | 7950.73 |
| thiol:disulfide interchange protein dsbd precursor | PH7735_01594 | Not Available | Positive | 1737033 - 1737785 | 26373.2 |
| hypothetical protein | PH7735_01595 | Not Available | Positive | 1737894 - 1739108 | 45319.9 |
| pentalenene oxygenase | PH7735_01596 | O88833 | Positive | 1739105 - 1740457 | 51505.1 |
| nickel-binding periplasmic protein precursor | PH7735_01597 | Q8YC41 | Negative | 1740532 - 1742355 | 67171.1 |
| d-beta-hydroxybutyrate dehydrogenase | PH7735_01598 | Not Available | Positive | 1742652 - 1743425 | 27204.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
