Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative metal-dependent hydrolase of the tim-barrel fold protein | PH7735_01579 | Not Available | Negative | 1720183 - 1721076 | 33557.9 |
| hypothetical protein | PH7735_01580 | Not Available | Negative | 1721175 - 1721813 | 24064.6 |
| methionine synthase | PH7735_01581 | Q8TTB0 | Negative | 1721907 - 1722605 | 25297.6 |
| radical sam superfamily protein | PH7735_01582 | P9WL78 | Positive | 1722760 - 1723899 | 42619.8 |
| hypothetical protein | PH7735_01583 | Not Available | Negative | 1723974 - 1724234 | 9476.47 |
| bifunctional homocysteine s-methyltransferase/5,10-methylenetetrahydrofolate reductase | PH7735_01584 | Q55786 | Negative | 1724441 - 1725454 | 35791.4 |
| hypothetical protein | PH7735_01585 | Not Available | Positive | 1725891 - 1726190 | 10477.0 |
| phosphoribosylaminoimidazole-succinocarboxamide synthase | PH7735_01586 | Q167J5 | Positive | 1726242 - 1726997 | 28076.8 |
| phosphoribosylformylglycinamidine synthase subunit purs | PH7735_01587 | P12049 | Positive | 1727091 - 1727321 | 8308.08 |
| phosphoribosylformylglycinamidine synthase 1 | PH7735_01588 | Q1GGM0 | Positive | 1727321 - 1727989 | 23589.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
