Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_01569 | Not Available | Positive | 1708963 - 1709487 | 19845.7 |
| transcription-repair-coupling factor | PH7735_01570 | Q1RI82 | Positive | 1709499 - 1712972 | 127948.0 |
| hypothetical protein | PH7735_01571 | Not Available | Positive | 1713052 - 1713804 | 28373.9 |
| spore cortex-lytic enzyme | PH7735_01572 | Not Available | Positive | 1713816 - 1715045 | 43106.1 |
| sulfonamide resistance protein | PH7735_01573 | P96709 | Negative | 1715077 - 1716267 | 42444.6 |
| voltage-gated potassium channel | PH7735_01574 | Not Available | Negative | 1716389 - 1716766 | 14095.0 |
| protein-disulfide isomerase | PH7735_01575 | Not Available | Negative | 1716763 - 1717404 | 23918.4 |
| benzoate--coa ligase | PH7735_01576 | Q5REV5 | Negative | 1717401 - 1718921 | 54813.5 |
| dna-binding transcriptional repressor puur | PH7735_01577 | Not Available | Positive | 1718943 - 1719611 | 24913.8 |
| inner membrane protein yqaa | PH7735_01578 | P0ADR0 | Negative | 1719656 - 1720084 | 15862.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
