Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trk system potassium uptake protein trka | PH7735_01559 | Q04856 | Positive | 1697752 - 1699197 | 52514.3 |
| trk system potassium uptake protein trkh | PH7735_01560 | P0AFZ8 | Positive | 1699202 - 1700719 | 54380.7 |
| host factor-i protein | PH7735_01561 | Q165Q6 | Positive | 1700845 - 1701084 | 8948.85 |
| gtp-binding protein hflx | PH7735_01562 | A0L4B2 | Positive | 1701084 - 1702355 | 47184.4 |
| hypothetical protein | PH7735_01563 | Not Available | Positive | 1702529 - 1702819 | 10361.2 |
| acyl-homoserine lactone acylase quip precursor | PH7735_01564 | P15558 | Negative | 1702960 - 1705425 | 90093.0 |
| 2-hydroxy-3-oxopropionate reductase | PH7735_01565 | O33730 | Positive | 1705506 - 1706378 | 30686.6 |
| alpha/beta hydrolase family protein | PH7735_01566 | Not Available | Negative | 1706375 - 1707151 | 27895.5 |
| hypothetical protein | PH7735_01567 | Not Available | Negative | 1707164 - 1707793 | 21958.0 |
| delta-aminolevulinic acid dehydratase | PH7735_01568 | P42504 | Negative | 1707845 - 1708846 | 36066.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
