Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| urease subunit alpha 1 | PH7735_00119 | Q5LSQ2 | Negative | 134701 - 136461 | 62289.1 |
| urease subunit beta 1 | PH7735_00120 | Q5LSQ3 | Negative | 136461 - 136766 | 10958.0 |
| hypothetical protein | PH7735_00121 | Not Available | Negative | 136763 - 136924 | 5534.91 |
| urease subunit gamma | PH7735_00122 | Q161T2 | Negative | 136937 - 137239 | 10888.3 |
| urease accessory protein ured | PH7735_00123 | Q5LSQ5 | Negative | 137241 - 138002 | 27369.1 |
| aliphatic amidase expression-regulating protein | PH7735_00124 | Not Available | Positive | 138468 - 139748 | 46044.1 |
| liv-i protein h | PH7735_00125 | Not Available | Positive | 139809 - 141764 | 69914.4 |
| leucine/isoleucine/valine transporter permease subunit | PH7735_00126 | Not Available | Positive | 141768 - 142997 | 44094.3 |
| l-cystine import atp-binding protein tcyn | PH7735_00127 | P0A194 | Positive | 142994 - 143734 | 26895.4 |
| liv-i protein f | PH7735_00128 | Not Available | Positive | 143738 - 144433 | 25265.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
