Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trimethylamine:corrinoid methyltransferase | PH7735_01539 | Not Available | Positive | 1677758 - 1679302 | 56100.9 |
| hypothetical protein | PH7735_01540 | Not Available | Negative | 1679295 - 1679600 | 11490.1 |
| hypothetical protein | PH7735_01541 | Not Available | Positive | 1679833 - 1680936 | 40362.2 |
| putative peroxiredoxin | PH7735_01542 | O69777 | Negative | 1681191 - 1681736 | 20012.5 |
| lipoyl synthase | PH7735_01543 | Q1GGW2 | Positive | 1681915 - 1682907 | 36680.0 |
| hypothetical protein | PH7735_01544 | Not Available | Negative | 1683018 - 1683194 | 7027.8 |
| hypoxanthine phosphoribosyltransferase | PH7735_01545 | P37171 | Negative | 1683191 - 1683730 | 20105.2 |
| toxin rata | PH7735_01546 | Q8FEY4 | Positive | 1683800 - 1684243 | 16889.2 |
| 2-methylcitrate dehydratase | PH7735_01547 | Not Available | Positive | 1684286 - 1685584 | 44972.3 |
| ammonia transporter | PH7735_01548 | O26757 | Negative | 1685703 - 1686902 | 41848.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
