Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| multidrug-efflux transporter | PH7735_01519 | Q92PZ0 | Positive | 1658657 - 1660036 | 48878.1 |
| glutamate--trna ligase | PH7735_01520 | O68142 | Negative | 1660033 - 1660869 | 31075.8 |
| methylenetetrahydrofolate--trna-(uracil-5-)- methyltransferase trmfo | PH7735_01521 | Q1GGU2 | Negative | 1660866 - 1662353 | 54093.3 |
| putative enoyl-coa hydratase echa8 | PH7735_01522 | A9JS71 | Negative | 1662760 - 1663545 | 28304.8 |
| putative domain 1 | PH7735_01523 | Not Available | Positive | 1663602 - 1664030 | 15256.7 |
| hypothetical protein | PH7735_01524 | Not Available | Positive | 1664177 - 1665145 | 34961.0 |
| hypothetical protein | PH7735_01525 | Not Available | Negative | 1665209 - 1665439 | 8680.48 |
| putative hth-type transcriptional regulator ydcr | PH7735_01526 | Q01856 | Positive | 1665527 - 1666921 | 50672.0 |
| 50s ribosomal protein l13 | PH7735_01527 | Q1GGU8 | Positive | 1667082 - 1667543 | 17174.9 |
| 30s ribosomal protein s9 | PH7735_01528 | A3PK94 | Positive | 1667547 - 1668032 | 17597.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
