Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_01479 | P75874 | Positive | 1621619 - 1622086 | 17131.1 |
| phosphoribosyl-atp pyrophosphatase | PH7735_01480 | Q5LUA0 | Negative | 1622103 - 1622420 | 11480.6 |
| imidazole glycerol phosphate synthase subunit hisf | PH7735_01481 | Q1GEZ3 | Negative | 1622417 - 1623178 | 26386.7 |
| hypothetical protein | PH7735_01482 | Not Available | Negative | 1623242 - 1623697 | 16967.7 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | PH7735_01483 | Q1GEZ5 | Negative | 1623762 - 1624484 | 25231.3 |
| hypothetical protein | PH7735_01484 | Not Available | Positive | 1624620 - 1625018 | 13655.3 |
| hypothetical protein | PH7735_01485 | Not Available | Negative | 1625015 - 1625266 | 9837.97 |
| ahpc/tsa family protein | PH7735_01486 | Not Available | Negative | 1625402 - 1625938 | 19590.3 |
| transcriptional activator ftra | PH7735_01487 | Not Available | Positive | 1626028 - 1626750 | 26799.3 |
| ribosomal-protein-alanine acetyltransferase | PH7735_01488 | Not Available | Negative | 1626754 - 1627203 | 16847.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
