Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| multidrug export protein mepa | PH7735_01469 | Q58119 | Negative | 1612016 - 1613407 | 49404.6 |
| hypothetical protein | PH7735_01470 | Not Available | Negative | 1613648 - 1614652 | 38414.6 |
| hypothetical protein | PH7735_01471 | Not Available | Positive | 1614775 - 1615218 | 16408.7 |
| hth-type transcriptional repressor acnr | PH7735_01472 | Not Available | Negative | 1615205 - 1615894 | 25019.7 |
| 4-hydroxyacetophenone monooxygenase | PH7735_01473 | P97501 | Positive | 1615963 - 1617279 | 48985.3 |
| bile acid transporter | PH7735_01474 | O34524 | Positive | 1617276 - 1618178 | 31531.6 |
| udp-glucose 4-epimerase | PH7735_01475 | Not Available | Positive | 1618175 - 1619113 | 33706.5 |
| putative oxidoreductase sadh | PH7735_01476 | Q566S6 | Positive | 1619110 - 1619868 | 26881.2 |
| Trna-pseudo | Not Available | Not Available | Positive | 1620012 - 1620095 | Not Available |
| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb | PH7735_01478 | Q88DE7 | Positive | 1620232 - 1621011 | 28023.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
