Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PH7735_00109 | Not Available | Negative | 126961 - 127371 | 15304.5 |
| ribosomal large subunit pseudouridine synthase a | PH7735_00110 | Q8FL93 | Positive | 127472 - 128128 | 24505.6 |
| glycosyl transferase family 11 | PH7735_00111 | Q58YV9 | Negative | 128146 - 128991 | 31662.2 |
| methyltransferase, fkbm family | PH7735_00112 | Not Available | Positive | 129061 - 129744 | 25916.7 |
| 3-succinoylsemialdehyde-pyridine dehydrogenase | PH7735_00113 | Not Available | Negative | 129809 - 131239 | 51336.3 |
| alkyl hydroperoxide reductase subunit c | PH7735_00114 | P34227 | Positive | 131475 - 132128 | 23691.0 |
| glycosyltransferase family 25 (lps biosynthesis protein) | PH7735_00115 | Not Available | Negative | 132202 - 132912 | 26134.5 |
| urease accessory protein ureg | PH7735_00116 | Q5LSP9 | Negative | 132981 - 133610 | 22295.9 |
| urease accessory protein uref | PH7735_00117 | Q5LSQ0 | Negative | 133607 - 134272 | 23709.2 |
| urease accessory protein uree 1 | PH7735_00118 | Q5LSQ1 | Negative | 134238 - 134690 | 16569.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
