Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ureidoglycolate lyase | PH7735_01449 | Q39BA7 | Positive | 1589975 - 1590802 | 29145.9 |
| phospholipase ytpa | PH7735_01450 | Not Available | Negative | 1590867 - 1591838 | 35569.4 |
| putative sterol carrier protein | PH7735_01451 | Not Available | Negative | 1591838 - 1592128 | 9762.37 |
| putative pep-cterm system tpr-repeat lipoprotein | PH7735_01452 | Not Available | Positive | 1592195 - 1592755 | 20296.3 |
| superfamily ii rna helicase | PH7735_01453 | O94445 | Positive | 1592772 - 1595567 | 102616.0 |
| heat shock protein 15 | PH7735_01454 | P0ACH0 | Positive | 1595588 - 1595992 | 15070.3 |
| ferredoxin ii | PH7735_01455 | P0CY91 | Positive | 1596047 - 1596385 | 12683.7 |
| rna polymerase-binding transcription factor card | PH7735_01456 | A0R561 | Positive | 1596663 - 1597181 | 19086.7 |
| cobalamin synthase | PH7735_01457 | Q89Q75 | Negative | 1597296 - 1598144 | 29358.5 |
| nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | PH7735_01458 | Q5LTJ1 | Positive | 1598150 - 1599160 | 34251.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
