Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosomal large subunit pseudouridine synthase d | PH7735_01439 | P50513 | Positive | 1581872 - 1582909 | 36937.5 |
| hypothetical protein | PH7735_01440 | Not Available | Positive | 1582902 - 1583246 | 12439.8 |
| hypothetical protein | PH7735_01441 | Not Available | Negative | 1583393 - 1583887 | 17641.8 |
| amino-acid acetyltransferase | PH7735_01442 | Not Available | Negative | 1584064 - 1584585 | 19288.4 |
| rna polymerase sigma-32 factor | PH7735_01443 | Not Available | Positive | 1584847 - 1585743 | 33782.4 |
| membrane dipeptidase (peptidase family m19) | PH7735_01444 | D4B2N2 | Negative | 1585820 - 1586992 | 42284.4 |
| dksa-like zinc finger domain containing protein | PH7735_01445 | P41039 | Positive | 1587119 - 1587388 | 9679.55 |
| hypothetical protein | PH7735_01446 | Not Available | Positive | 1587385 - 1587528 | 5373.56 |
| cold shock protein cspa | PH7735_01447 | Not Available | Positive | 1587653 - 1587859 | 7110.33 |
| oligoendopeptidase f, plasmid | PH7735_01448 | Not Available | Negative | 1587944 - 1589764 | 68884.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
