Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| secondary thiamine-phosphate synthase enzyme | PH7735_01419 | P74125 | Positive | 1565898 - 1566317 | 15501.5 |
| transcriptional repressor nrdr | PH7735_01420 | Q169C7 | Positive | 1566534 - 1567001 | 17952.4 |
| riboflavin biosynthesis protein ribd | PH7735_01421 | P25539 | Positive | 1567023 - 1568090 | 37272.0 |
| capsule polysaccharide biosynthesis protein | PH7735_01422 | P42217 | Negative | 1568107 - 1570107 | 74224.9 |
| polysaccharide export protein wza | PH7735_01423 | Not Available | Negative | 1570109 - 1571245 | 40444.1 |
| capsule polysaccharide biosynthesis protein | PH7735_01424 | P42218 | Negative | 1571341 - 1572672 | 50749.2 |
| riboflavin synthase | PH7735_01425 | Q2YN92 | Positive | 1572839 - 1573426 | 21020.9 |
| proline racemase | PH7735_01426 | Q9I489 | Negative | 1573441 - 1574493 | 37362.0 |
| riboflavin biosynthesis protein ribba | PH7735_01427 | A0Q3H7 | Positive | 1574643 - 1575764 | 40753.8 |
| 6,7-dimethyl-8-ribityllumazine synthase 1 | PH7735_01428 | Q28LT2 | Positive | 1575768 - 1576319 | 19391.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
