Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sarcosine oxidase subunit beta | PH7735_01409 | Not Available | Positive | 1554232 - 1555488 | 45550.5 |
| sarcosine oxidase, delta subunit family | PH7735_01410 | O87387 | Positive | 1555503 - 1555775 | 10183.7 |
| aminomethyltransferase | PH7735_01411 | O87386 | Positive | 1555772 - 1558705 | 105228.0 |
| sarcosine oxidase, gamma subunit family | PH7735_01412 | Not Available | Positive | 1558698 - 1559249 | 19548.5 |
| hypothetical protein | PH7735_01413 | Not Available | Positive | 1559284 - 1559586 | 11364.6 |
| dna primase | PH7735_01414 | P0A118 | Positive | 1559628 - 1561568 | 71869.7 |
| sigma-70 | PH7735_01415 | D5AQI9 | Positive | 1561695 - 1563680 | 75406.6 |
| hypothetical protein | PH7735_01416 | Not Available | Positive | 1563677 - 1564438 | 28319.9 |
| hypothetical protein | PH7735_01417 | Not Available | Positive | 1564469 - 1564882 | 14785.4 |
| haloalkane dehalogenase | PH7735_01418 | D4Z2G1 | Positive | 1564963 - 1565826 | 31996.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
