Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative mfs-type transporter ycad | PH7735_01399 | Not Available | Negative | 1543787 - 1545049 | 44786.2 |
| hypothetical protein | PH7735_01400 | Not Available | Negative | 1545140 - 1545748 | 22294.2 |
| proclavaminate amidinohydrolase | PH7735_01401 | P0DJQ3 | Positive | 1545865 - 1546824 | 34344.5 |
| general stress protein 69 | PH7735_01402 | P0A9T4 | Positive | 1546915 - 1547958 | 38318.5 |
| hypothetical protein | PH7735_01403 | Not Available | Positive | 1548091 - 1548588 | 17851.7 |
| flp pilus assembly protein tadg | PH7735_01404 | Not Available | Negative | 1548567 - 1549115 | 20362.1 |
| flp pilus assembly protein tadg | PH7735_01405 | Not Available | Negative | 1549115 - 1549651 | 19848.1 |
| flp pilus assembly protein tadg | PH7735_01406 | Not Available | Negative | 1549648 - 1551543 | 71105.8 |
| glutamate dehydrogenase | PH7735_01407 | Q53199 | Positive | 1551873 - 1553303 | 52620.0 |
| hypothetical protein | PH7735_01408 | Not Available | Positive | 1553428 - 1554018 | 21180.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
