Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| taurine--pyruvate aminotransferase | PH7735_01379 | Not Available | Positive | 1517758 - 1519131 | 49333.6 |
| hypothetical protein | PH7735_01380 | Q7Z7K6 | Negative | 1519183 - 1519545 | 13363.9 |
| rhomboid protease glup | PH7735_01381 | Not Available | Negative | 1519542 - 1520291 | 27083.6 |
| bifunctional protein puta | PH7735_01382 | P10503 | Negative | 1520322 - 1523732 | 121060.0 |
| leucine-responsive regulatory protein | PH7735_01383 | Not Available | Positive | 1523841 - 1524317 | 17412.1 |
| putative o-linked n-acetylglucosamine transferase, spindly family | PH7735_01384 | Not Available | Positive | 1524406 - 1524900 | 18197.1 |
| Trna-leu | Not Available | Not Available | Positive | 1525114 - 1525199 | Not Available |
| hypothetical protein | PH7735_01386 | Not Available | Negative | 1525474 - 1525791 | 11879.1 |
| acyl carrier protein | PH7735_01387 | Not Available | Negative | 1525995 - 1526228 | 8689.53 |
| vi polysaccharide export protein vexe | PH7735_01388 | Not Available | Positive | 1526273 - 1527580 | 48402.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
