Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia thalassica |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
954692 bp
Thymine Count
975031 bp
Guanine Count
1249958 bp
Cytosine Count
1178635 bp
Genome Length
4358316 bp
Protein-coding Genes
4047 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative hydroxypyruvate reductase | PH7735_01369 | O58231 | Negative | 1508094 - 1509215 | 39195.9 |
| putative alkylphosphonate utilization operon protein phna | PH7735_01370 | Not Available | Positive | 1509330 - 1509851 | 18655.3 |
| 3-succinoylsemialdehyde-pyridine dehydrogenase | PH7735_01371 | H8ZPX2 | Negative | 1509872 - 1511302 | 50774.5 |
| d-tyrosyl-trna(tyr) deacylase | PH7735_01372 | Q5LP58 | Negative | 1511424 - 1511861 | 15465.6 |
| 5-dehydro-2-deoxygluconokinase | PH7735_01373 | P42720 | Negative | 1511858 - 1512754 | 31773.0 |
| putative domain 1 | PH7735_01374 | Not Available | Negative | 1512886 - 1513377 | 17459.2 |
| 5,10-methylenetetrahydrofolate reductase | PH7735_01375 | P11003 | Negative | 1513449 - 1514333 | 31908.7 |
| hca operon transcriptional activator | PH7735_01376 | P0A9G0 | Positive | 1514407 - 1515318 | 33955.0 |
| putative nadp-dependent oxidoreductase yfmj | PH7735_01377 | P76113 | Negative | 1515400 - 1516440 | 36661.3 |
| inositol-1-monophosphatase | PH7735_01378 | Not Available | Positive | 1516600 - 1517391 | 29023.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
